HL_3J6Y_013

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

3J6Y|1|1S|A|492, 3J6Y|1|1S|U|493, 3J6Y|1|1S|U|494, 3J6Y|1|1S|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_013 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5621

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J6Y|1|1S|C|491
3J6Y|1|1S|A|492
3J6Y|1|1S|U|493
3J6Y|1|1S|U|494
3J6Y|1|1S|C|495
3J6Y|1|1S|G|496

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains