HL_3J6Y_033
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 3J6Y|1|1S|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_033 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2025
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|1S|A|1550
3J6Y|1|1S|U|1551
3J6Y|1|1S|U|1552
3J6Y|1|1S|G|1553
3J6Y|1|1S|U|1554
3J6Y|1|1S|A|1555
3J6Y|1|1S|A|1556
3J6Y|1|1S|U|1557
3J6Y|1|1S|U|1558
3J6Y|1|1S|A|1559
3J6Y|1|1S|U|1560
3J6Y|1|1S|U|1561
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 15
- 40S ribosomal protein S15
- Chain 18
- 40S ribosomal protein S18
- Chain 19
- 40S ribosomal protein S19
- Chain 29
- 40S ribosomal protein S29
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