HL_3J6Y_040

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

3J6Y|1|2S|U|133, 3J6Y|1|2S|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_040 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.3122

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

3J6Y|1|2S|C|132
3J6Y|1|2S|U|133
3J6Y|1|2S|U|134
3J6Y|1|2S|C|135
3J6Y|1|2S|G|136

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 55

60S ribosomal protein L15

Chain 75

60S ribosomal protein L35