HL_3J6Y_054

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

3J6Y|1|2S|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_054 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.4663

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

3J6Y|1|2S|G|763
3J6Y|1|2S|U|764
3J6Y|1|2S|C|765
3J6Y|1|2S|U|766
3J6Y|1|2S|U|767
3J6Y|1|2S|C|768

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 53

60S ribosomal protein L13