HL_3J6Y_055

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_055 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1775

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|G|844
3J6Y|1|2S|G|845
3J6Y|1|2S|A|846
3J6Y|1|2S|A|847
3J6Y|1|2S|A|848
3J6Y|1|2S|C|849

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain 13

40S ribosomal protein S13

Chain 1S

Small subunit ribosomal RNA; SSU rRNA