HL_3J6Y_063

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

3J6Y|1|2S|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_063 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.472

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3J6Y|1|2S|C|1239
3J6Y|1|2S|A|1240
3J6Y|1|2S|U|1241
3J6Y|1|2S|G|1242
3J6Y|1|2S|G|1243
3J6Y|1|2S|A|1244
3J6Y|1|2S|A|1245
3J6Y|1|2S|G|1246
3J6Y|1|2S|U|1247
3J6Y|1|2S|C|1248
3J6Y|1|2S|G|1249

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains