HL_3J6Y_074

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_074 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1903

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3J6Y|1|2S|G|1719
3J6Y|1|2S|U|1720
3J6Y|1|2S|U|1721
3J6Y|1|2S|U|1722
3J6Y|1|2S|A|1723
3J6Y|1|2S|U|1724
3J6Y|1|2S|C|1725

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 59

60S ribosomal protein L19

Chain 83

60S ribosomal protein L43