HL_3J6Y_079

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3J6Y|1|2S|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_079 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.2232

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3J6Y|1|2S|C|1923
3J6Y|1|2S|U|1924
3J6Y|1|2S|U|1925
3J6Y|1|2S|C|1926
3J6Y|1|2S|G|1927
3J6Y|1|2S|G|1928

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain 81

60S ribosomal protein L41

Chain 83

60S ribosomal protein L43