HL_3J6Y_086

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

3J6Y|1|2S|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_086 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.2303

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J6Y|1|2S|G|2253
3J6Y|1|2S|U|2254
3J6Y|1|2S|A|2255
3J6Y|1|2S|A|2256
3J6Y|1|2S|C|2257
3J6Y|1|2S|U|2258
3J6Y|1|2S|A|2259
3J6Y|1|2S|U|2260
3J6Y|1|2S|G|2261
3J6Y|1|2S|A|2262
3J6Y|1|2S|C|2263

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain 30

40S ribosomal protein S30

Chain IR

TSV IRES mRNA