HL_3J6Y_093

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

3J6Y|1|2S|A|2637, 3J6Y|1|2S|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_093 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1708

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

3J6Y|1|2S|U|2633
3J6Y|1|2S|U|2634
3J6Y|1|2S|A|2635
3J6Y|1|2S|A|2636
3J6Y|1|2S|A|2637
3J6Y|1|2S|C|2638
3J6Y|1|2S|G|2639
3J6Y|1|2S|A|2640
3J6Y|1|2S|U|2641
3J6Y|1|2S|A|2642
3J6Y|1|2S|A|2643
3J6Y|1|2S|C|2644
3J6Y|1|2S|G|2645

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 61

60S ribosomal protein L21

Chain 69

60S ribosomal protein L29