HL_3J6Y_100

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

3J6Y|1|2S|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_100 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1882

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3J6Y|1|2S|A|2897
3J6Y|1|2S|G|2898
3J6Y|1|2S|C|2899
3J6Y|1|2S|A|2900
3J6Y|1|2S|G|2901
3J6Y|1|2S|A|2902
3J6Y|1|2S|A|2903
3J6Y|1|2S|U|2904

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 80

60S ribosomal protein L40

Chain L9

60S ribosomal protein L9