HL_3J6Y_107

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

3J6Y|1|2S|A|3243, 3J6Y|1|2S|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_107 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2089

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3J6Y|1|2S|C|3240
3J6Y|1|2S|G|3241
3J6Y|1|2S|G|3242
3J6Y|1|2S|A|3243
3J6Y|1|2S|A|3244
3J6Y|1|2S|A|3245
3J6Y|1|2S|G|3246
3J6Y|1|2S|G|3247

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 56

60S ribosomal protein L16

Chain L3

60S ribosomal protein L3