HL_3J6Y_112
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_112 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.2863
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
3J6Y|1|8S|C|47
3J6Y|1|8S|A|48
3J6Y|1|8S|G|49
3J6Y|1|8S|C|50
3J6Y|1|8S|G|51
3J6Y|1|8S|A|52
3J6Y|1|8S|A|53
3J6Y|1|8S|A|54
3J6Y|1|8S|U|55
3J6Y|1|8S|G|56
Current chains
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 65
- 60S ribosomal protein L25
- Chain 75
- 60S ribosomal protein L35
- Chain 77
- 60S ribosomal protein L37
- Chain 79
- 60S ribosomal protein L39
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