HL_3J73_019

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_019 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.1455

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

3J73|1|5|G|1561
3J73|1|5|G|1562
3J73|1|5|A|1563
3J73|1|5|A|1564
3J73|1|5|A|1565
3J73|1|5|C|1566

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

18S ribosomal RNA

Chain SN

Ribosomal protein uS15