HL_3J73_031

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_031 not in the Motif Atlas

Geometric match to HL_7A0S_032

Geometric discrepancy: 0.2144

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

3J73|1|5|A|2376
3J73|1|5|C|2377
3J73|1|5|G|2378
3J73|1|5|A|2379
3J73|1|5|G|2380
3J73|1|5|A|2381
3J73|1|5|A|2382
3J73|1|5|C|2383
3J73|1|5|U|2384

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uL22

Chain R

Ribosomal protein eL19

Chain d

Ribosomal protein eL31