HL_3J73_033

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_033 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.282

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

3J73|1|5|C|2458
3J73|1|5|G|2459
3J73|1|5|A|2460
3J73|1|5|G|2461
3J73|1|5|C|2462
3J73|1|5|G|2463

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein eL15

Chain j

Ribosomal protein eL37