HL_3J73_047

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGCGGCGGG

Length

11 nucleotides

Bulged bases

3J73|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_047 not in the Motif Atlas

Geometric match to HL_1HMH_004

Geometric discrepancy: 0.3859

The information below is about HL_1HMH_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52841.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

3J73|1|5|C|3666
3J73|1|5|C|3667
3J73|1|5|C|3668
3J73|1|5|G|3669
3J73|1|5|C|3670
3J73|1|5|G|3671
3J73|1|5|G|3672
3J73|1|5|C|3673
3J73|1|5|G|3674
3J73|1|5|G|3675
3J73|1|5|G|3676

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain N

Ribosomal protein eL15