HL_3J73_052

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

3J73|1|5|G|4104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_052 not in the Motif Atlas

Geometric match to HL_4LFB_031

Geometric discrepancy: 0.2785

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

3J73|1|5|C|4102
3J73|1|5|C|4103
3J73|1|5|G|4104
3J73|1|5|A|4105
3J73|1|5|G|4106
3J73|1|5|G|4107

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain SB

Ribosomal protein eS1