HL_3J73_055

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

3J73|1|5|A|4214, 3J73|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_055 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.2582

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J73|1|5|U|4210
3J73|1|5|C|4211
3J73|1|5|A|4212
3J73|1|5|A|4213
3J73|1|5|A|4214
3J73|1|5|C|4215
3J73|1|5|G|4216
3J73|1|5|G|4217
3J73|1|5|U|4218
3J73|1|5|A|4219
3J73|1|5|A|4220
3J73|1|5|C|4221
3J73|1|5|G|4222

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein uL16

Chain T

Ribosomal protein eL21

Chain b

Ribosomal protein eL29