HL_3J73_074

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

3J73|1|8|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_074 not in the Motif Atlas

Geometric match to HL_8P9A_188

Geometric discrepancy: 0.3061

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

3J73|1|8|C|107
3J73|1|8|A|108
3J73|1|8|C|109
3J73|1|8|U|110
3J73|1|8|U|111
3J73|1|8|G|112

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

28S ribosomal RNA

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39