HL_3J73_084

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

3J73|1|S2|A|448, 3J73|1|S2|C|450, 3J73|1|S2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_084 not in the Motif Atlas

Geometric match to HL_4V88_195

Geometric discrepancy: 0.2773

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3J73|1|S2|C|441
3J73|1|S2|C|442
3J73|1|S2|U|443
3J73|1|S2|G|444
3J73|1|S2|A|445
3J73|1|S2|G|446
3J73|1|S2|A|447
3J73|1|S2|A|448
3J73|1|S2|A|449
3J73|1|S2|C|450
3J73|1|S2|G|451
3J73|1|S2|G|452

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8