HL_3J73_089

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

3J73|1|S2|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_089 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.2658

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J73|1|S2|C|618
3J73|1|S2|A|619
3J73|1|S2|G|620
3J73|1|S2|C|621
3J73|1|S2|C|622
3J73|1|S2|G|623

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S4

Messenger RNA

Chain SX

Ribosomal protein uS12