HL_3J73_092

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

3J73|1|S2|G|836, 3J73|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_092 not in the Motif Atlas

Homologous match to HL_9PN5_093

Geometric discrepancy: 0.532

The information below is about HL_9PN5_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

3J73|1|S2|C|833
3J73|1|S2|C|834
3J73|1|S2|C|835
3J73|1|S2|G|836
3J73|1|S2|A|837
3J73|1|S2|G|838
3J73|1|S2|C|839
3J73|1|S2|C|840
3J73|1|S2|G|841

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SY

Ribosomal protein eS24