HL_3J73_094

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_094 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.2457

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

3J73|1|S2|A|957
3J73|1|S2|G|958
3J73|1|S2|G|959
3J73|1|S2|U|960
3J73|1|S2|G|961
3J73|1|S2|A|962
3J73|1|S2|A|963
3J73|1|S2|A|964
3J73|1|S2|U|965
3J73|1|S2|U|966

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S4

Messenger RNA

Chain SF

Ribosomal protein uS7

Chain SO

Ribosomal protein uS11