HL_3J73_109

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

3J73|1|S5|G|18, 3J73|1|S5|G|19, 3J73|1|S5|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_109 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3159

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

3J73|1|S5|C|13
3J73|1|S5|A|14
3J73|1|S5|G|15
3J73|1|S5|G|18
3J73|1|S5|G|19
3J73|1|S5|U|20
3J73|1|S5|A|21
3J73|1|S5|G|22

Current chains

Chain S5

A/P tRNA

Nearby chains

Chain 5

28S ribosomal RNA