HL_3J73_113

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUGAAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_113 not in the Motif Atlas

Homologous match to HL_6GSL_238

Geometric discrepancy: 0.4381

The information below is about HL_6GSL_238

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36684.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J73|1|S6|G|30
3J73|1|S6|A|31
3J73|1|S6|U|32
3J73|1|S6|U|33
3J73|1|S6|G|34
3J73|1|S6|A|35
3J73|1|S6|A|36
3J73|1|S6|A|37
3J73|1|S6|A|38
3J73|1|S6|U|39
3J73|1|S6|C|40

Current chains

Chain S6

P/E tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S4

Messenger RNA

Chain SQ

Ribosomal protein uS9