HL_3J73_115

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

3J73|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_115 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.3078

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

3J73|1|5|U|204
3J73|1|5|C|205
3J73|1|5|U|206
3J73|1|5|G|207
3J73|1|5|A|208
3J73|1|5|U|209
3J73|1|5|C|210
3J73|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein uL24

Chain e

Ribosomal protein eL32