HL_3J74_086

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

3J74|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J74_086 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.1781

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

3J74|1|S2|C|462
3J74|1|S2|C|463
3J74|1|S2|A|464
3J74|1|S2|A|465
3J74|1|S2|G|466
3J74|1|S2|G|467

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 4

Eukaryotic elongation factor 2

Chain SG

Ribosomal protein eS6

Chain V

Ribosomal protein uL14