HL_3J74_109

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

3J74|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J74_109 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.3077

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

3J74|1|5|U|204
3J74|1|5|C|205
3J74|1|5|U|206
3J74|1|5|G|207
3J74|1|5|A|208
3J74|1|5|U|209
3J74|1|5|C|210
3J74|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein uL24

Chain e

Ribosomal protein eL32