HL_3J77_004

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

3J77|1|1S|U|192, 3J77|1|1S|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_004 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.4478

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3J77|1|1S|C|190
3J77|1|1S|C|191
3J77|1|1S|U|192
3J77|1|1S|U|193
3J77|1|1S|U|194
3J77|1|1S|G|195

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8