HL_3J77_043

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

3J77|1|2S|G|218, 3J77|1|2S|A|219, 3J77|1|2S|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_043 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.2354

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

3J77|1|2S|G|216
3J77|1|2S|U|217
3J77|1|2S|G|218
3J77|1|2S|A|219
3J77|1|2S|G|220
3J77|1|2S|A|221
3J77|1|2S|A|222
3J77|1|2S|U|223
3J77|1|2S|C|224

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L26

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4