3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
UUUGGGAAUG
Length
10 nucleotides
Bulged bases
3J77|1|2S|A|284, 3J77|1|2S|A|285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J77_044 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.1746
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

3J77|1|2S|U|278
3J77|1|2S|U|279
3J77|1|2S|U|280
3J77|1|2S|G|281
3J77|1|2S|G|282
3J77|1|2S|G|283
3J77|1|2S|A|284
3J77|1|2S|A|285
3J77|1|2S|U|286
3J77|1|2S|G|287

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 63
60S ribosomal protein L13
Chain 65
60S ribosomal protein L15
Chain 78
60S ribosomal protein L28
Chain 92
60S ribosomal protein L42

Coloring options:


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