HL_3J77_055
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J77_055 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.1702
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
3J77|1|2S|G|844
3J77|1|2S|G|845
3J77|1|2S|A|846
3J77|1|2S|A|847
3J77|1|2S|A|848
3J77|1|2S|C|849
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 13
- 40S ribosomal protein S13
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 93
- 60S ribosomal protein L43
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