HL_3J77_060

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_060 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1738

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3J77|1|2S|C|1076
3J77|1|2S|U|1077
3J77|1|2S|U|1078
3J77|1|2S|A|1079
3J77|1|2S|A|1080
3J77|1|2S|U|1081
3J77|1|2S|U|1082
3J77|1|2S|G|1083

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 71

60S ribosomal protein L21

Chain 79

60S ribosomal protein L29

Chain L5

60S ribosomal protein L5