HL_3J77_062

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_062 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.1844

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|G|1148
3J77|1|2S|G|1149
3J77|1|2S|A|1150
3J77|1|2S|U|1151
3J77|1|2S|G|1152
3J77|1|2S|A|1153
3J77|1|2S|A|1154
3J77|1|2S|C|1155

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain 82

60S ribosomal protein L32

Chain 83

60S ribosomal protein L33

Chain L7

60S ribosomal protein L7