HL_3J77_070

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

3J77|1|2S|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_070 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3825

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J77|1|2S|A|1566
3J77|1|2S|U|1567
3J77|1|2S|U|1568
3J77|1|2S|U|1569
3J77|1|2S|U|1570
3J77|1|2S|A|1571
3J77|1|2S|U|1572

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA