HL_3J77_074

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_074 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1619

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3J77|1|2S|G|1719
3J77|1|2S|U|1720
3J77|1|2S|U|1721
3J77|1|2S|U|1722
3J77|1|2S|A|1723
3J77|1|2S|U|1724
3J77|1|2S|C|1725

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19

Chain 93

60S ribosomal protein L43