HL_3J77_090

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

3J77|1|2S|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_090 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3674

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3J77|1|2S|C|2568
3J77|1|2S|A|2569
3J77|1|2S|U|2570
3J77|1|2S|U|2571
3J77|1|2S|C|2572
3J77|1|2S|G|2573

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 77

60S ribosomal protein L27