HL_3J77_106

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_106 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1742

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|C|3240
3J77|1|2S|G|3241
3J77|1|2S|G|3242
3J77|1|2S|A|3243
3J77|1|2S|A|3244
3J77|1|2S|A|3245
3J77|1|2S|G|3246
3J77|1|2S|G|3247

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L16

Chain L3

60S ribosomal protein L3