HL_3J77_115

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_115 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.1357

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

3J77|1|PT|G|32
3J77|1|PT|C|33
3J77|1|PT|U|34
3J77|1|PT|C|35
3J77|1|PT|A|36
3J77|1|PT|U|37
3J77|1|PT|A|38
3J77|1|PT|A|39
3J77|1|PT|C|40

Current chains

Chain PT

P/E-site initiator transfer RNAfMet

Nearby chains

Chain 16

40S ribosomal protein S16

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain MR

messenger RNA