HL_3J77_122
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J77_122 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.1631
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J77|1|8S|C|47
3J77|1|8S|A|48
3J77|1|8S|G|49
3J77|1|8S|C|50
3J77|1|8S|G|51
3J77|1|8S|A|52
3J77|1|8S|A|53
3J77|1|8S|A|54
3J77|1|8S|U|55
3J77|1|8S|G|56
Current chains
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 75
- 60S ribosomal protein L25
- Chain 85
- 60S ribosomal protein L35
- Chain 87
- 60S ribosomal protein L37
- Chain 89
- 60S ribosomal protein L39
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