HL_3J78_012

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

3J78|1|1S|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2446

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J78|1|1S|U|450
3J78|1|1S|A|451
3J78|1|1S|A|452
3J78|1|1S|U|453
3J78|1|1S|U|454
3J78|1|1S|C|455
3J78|1|1S|A|456

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S4

40S ribosomal protein S4