HL_3J78_021
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_021 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2479
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
3J78|1|1S|A|900
3J78|1|1S|G|901
3J78|1|1S|G|902
3J78|1|1S|U|903
3J78|1|1S|G|904
3J78|1|1S|A|905
3J78|1|1S|A|906
3J78|1|1S|A|907
3J78|1|1S|U|908
3J78|1|1S|U|909
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 14
- 40S ribosomal protein S14
- Chain 26
- 40S ribosomal protein S26
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain ET
- Transfer RNA; tRNA
- Chain MR
- messenger RNA
- Chain S5
- 40S ribosomal protein S5
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