HL_3J78_031

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_031 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2226

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J78|1|1S|C|1359
3J78|1|1S|A|1360
3J78|1|1S|U|1361
3J78|1|1S|U|1362
3J78|1|1S|U|1363
3J78|1|1S|G|1364

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 16

40S ribosomal protein S16

Chain 19

40S ribosomal protein S19

Chain S5

40S ribosomal protein S5