HL_3J78_032

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUUUCAAGC

Length

9 nucleotides

Bulged bases

3J78|1|1S|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_032 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.357

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3J78|1|1S|G|1395
3J78|1|1S|U|1396
3J78|1|1S|U|1397
3J78|1|1S|U|1398
3J78|1|1S|C|1399
3J78|1|1S|A|1400
3J78|1|1S|A|1401
3J78|1|1S|G|1402
3J78|1|1S|C|1403

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17

Chain 28

40S ribosomal protein S28

Chain RC

Guanine nucleotide-binding protein subunit beta-like protein