HL_3J78_034
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 3J78|1|1S|U|1557, 3J78|1|1S|U|1558, 3J78|1|1S|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_034 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1496
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J78|1|1S|A|1550
3J78|1|1S|U|1551
3J78|1|1S|U|1552
3J78|1|1S|G|1553
3J78|1|1S|U|1554
3J78|1|1S|A|1555
3J78|1|1S|A|1556
3J78|1|1S|U|1557
3J78|1|1S|U|1558
3J78|1|1S|A|1559
3J78|1|1S|U|1560
3J78|1|1S|U|1561
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 15
- 40S ribosomal protein S15
- Chain 18
- 40S ribosomal protein S18
- Chain 19
- 40S ribosomal protein S19
- Chain 29
- 40S ribosomal protein S29
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