HL_3J78_041

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

3J78|1|2S|U|133, 3J78|1|2S|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_041 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.407

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

3J78|1|2S|C|132
3J78|1|2S|U|133
3J78|1|2S|U|134
3J78|1|2S|C|135
3J78|1|2S|G|136

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 65

60S ribosomal protein L15

Chain 85

60S ribosomal protein L35