HL_3J78_043

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

3J78|1|2S|U|210, 3J78|1|2S|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_043 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.1765

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J78|1|2S|C|208
3J78|1|2S|A|209
3J78|1|2S|U|210
3J78|1|2S|A|211
3J78|1|2S|G|212

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4