HL_3J78_044

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

3J78|1|2S|G|218, 3J78|1|2S|A|219, 3J78|1|2S|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_044 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1915

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

3J78|1|2S|G|216
3J78|1|2S|U|217
3J78|1|2S|G|218
3J78|1|2S|A|219
3J78|1|2S|G|220
3J78|1|2S|A|221
3J78|1|2S|A|222
3J78|1|2S|U|223
3J78|1|2S|C|224

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L26

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4