HL_3J78_049

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

3J78|1|2S|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_049 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3679

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J78|1|2S|C|543
3J78|1|2S|C|544
3J78|1|2S|U|545
3J78|1|2S|C|546
3J78|1|2S|G|547
3J78|1|2S|G|548

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains